discussion and development of Emacs Snakemake mode
 help / color / mirror / code / Atom feed
From: Nicholas Knoblauch <knoblauch.nicholas@gene.com>
To: snakemake-mode@inbox.kyleam.com
Subject: Add 'envmodules' and 'containers' to list of top level commands
Date: Sun, 1 Nov 2020 13:18:10 -0600	[thread overview]
Message-ID: <CAG8C6oeB0CSQymy=GmrrFJEUvoq0TFUPv-k2SL0w6sTy4M+FNQ@mail.gmail.com> (raw)

[-- Attachment #1: Type: text/plain, Size: 633 bytes --]

Hi,
It would be great if snakemake-mode could support `envmodules` and
`containers` as top level commands as per
https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html?highlight=envmodules#using-environment-modules
and
https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html?highlight=envmodules#running-jobs-in-containers

Also, maybe I should file a separate issue about this (maybe it isn't even
a snakemake-mode question), but is there a way to force the "rule" line to
never indent (even if I hit 'Tab' on that line)?
I consistently run into whitespace issues with org-mode+snakemake-mode.

Thanks!

[-- Attachment #2: Type: text/html, Size: 1013 bytes --]

             reply	other threads:[~2020-11-01 19:18 UTC|newest]

Thread overview: 4+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2020-11-01 19:18 Nicholas Knoblauch [this message]
2020-11-01 20:36 ` [PATCH] mode: Add "container" and "envmodules" keywords Kyle Meyer
2020-11-01 21:04   ` Nicholas Knoblauch
2020-11-01 21:13     ` Kyle Meyer

Reply instructions:

You may reply publicly to this message via plain-text email
using any one of the following methods:

* Save the following mbox file, import it into your mail client,
  and reply-to-all from there: mbox

  Avoid top-posting and favor interleaved quoting:
  https://en.wikipedia.org/wiki/Posting_style#Interleaved_style

  List information: https://git.kyleam.com/snakemake-mode

* Reply using the --to, --cc, and --in-reply-to
  switches of git-send-email(1):

  git send-email \
    --in-reply-to='CAG8C6oeB0CSQymy=GmrrFJEUvoq0TFUPv-k2SL0w6sTy4M+FNQ@mail.gmail.com' \
    --to=knoblauch.nicholas@gene.com \
    --cc=snakemake-mode@inbox.kyleam.com \
    /path/to/YOUR_REPLY

  https://kernel.org/pub/software/scm/git/docs/git-send-email.html

* If your mail client supports setting the In-Reply-To header
  via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line before the message body.
Code repositories for project(s) associated with this public inbox

	https://git.kyleam.com/snakemake-mode/

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).