From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp2 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms12 with LMTPS id eIBcMgYKn19BBAAAsNZ9tg (envelope-from ) for ; Sun, 01 Nov 2020 19:18:30 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp2 with LMTPS id CGgMLgYKn19tfwAAB5/wlQ (envelope-from ) for ; Sun, 01 Nov 2020 19:18:30 +0000 Received: from sc1esmtaext02.gene.com (sc1esmtaext02.gene.com [192.12.78.22]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 4227F94021E for ; Sun, 1 Nov 2020 19:18:25 +0000 (UTC) Received: from sc1esmtaint02.gene.com ([10.39.18.69]) by sc1esmtaext02.gene.com with ESMTP id 0A1JINU1022858-0A1JINU3022858 (version=TLSv1.2 cipher=ECDHE-RSA-AES256-GCM-SHA384 bits=256 verify=OK) for ; Sun, 1 Nov 2020 19:18:23 GMT Received: from mail-wr1-f70.google.com (mail-wr1-f70.google.com [209.85.221.70]) by sc1esmtaint02.gene.com with ESMTP id 0A1JIMXG007277-0A1JIMXI007277 (version=TLSv1.2 cipher=ECDHE-RSA-AES256-GCM-SHA384 bits=256 verify=CAFAIL) for ; Sun, 1 Nov 2020 19:18:23 GMT Received: by mail-wr1-f70.google.com with SMTP id t11so5512778wrv.10 for ; Sun, 01 Nov 2020 11:18:23 -0800 (PST) X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:mime-version:from:date:message-id:subject:to; bh=wDKQDavmRF09iQjbD1Y+aNCtKhuQ/UTBDb/5cOEqCj4=; b=XMVunF5IxfZATO4hJpII0aYn7D2JzbebRasAWe4BAIve5bKllV6ijoeIN6lj3HOufl akq4G67ClwpcYp1vnvvYxMxoJD4nto/bfcTUuxiAZ8F4dxFGpSXz5EyRStZ0/zK/Dniz yN9Renq/AtkuuRlS6GCmM8wguFUou1quQuE/UK/tZicNqVLP0u0EG5ULOz5kDZ0yZFp9 6/lZx95mr01JTWP0FJ2Ptl6HIRFkLiKtt1Z8z/cwd7bDINeoUvrvLPibVI6c7pxhTbnl zUmt8Tf7UYNscGADVyWmNDtZ2yDRuy+DVQfoJBA0o4XVHfsKxycOgCmnq6s2O4GgzQql rJ9g== X-Gm-Message-State: AOAM533XoioiKEuel6D7S+AjHpVftsg42zgPPjFFUJ7Hj+bKLkXser2Q Jyp83smbHj2yhqSa8ZO7jyAEuhCmrCOCmX04GHXO3cC3pdzi85oJw81OEwyP5g/GkizUutP7Rof bctptMJTJ3HO0X/wF67JoxCuScsbH7w9Q9Gnz0B7DWaU= X-Received: by 2002:adf:e682:: with SMTP id r2mr15769510wrm.184.1604258301951; Sun, 01 Nov 2020 11:18:21 -0800 (PST) X-Google-Smtp-Source: ABdhPJxxUfT/R0WXx1Z+SnoWAFSFrrlvtxt3zcRcrNiXKAbAY05nhtq/lpIsGd2vsuijktOK3ARtMzmGtrNCEjymm6k= X-Received: by 2002:adf:e682:: with SMTP id r2mr15769487wrm.184.1604258301647; Sun, 01 Nov 2020 11:18:21 -0800 (PST) MIME-Version: 1.0 From: Nicholas Knoblauch Date: Sun, 1 Nov 2020 13:18:10 -0600 Message-ID: Subject: Add 'envmodules' and 'containers' to list of top level commands To: snakemake-mode@inbox.kyleam.com Content-Type: multipart/alternative; boundary="00000000000032c0f805b3107ed3" DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; d=gene.com; s=fmailg01; c=relaxed/relaxed; h=mime-version:from:date:message-id:subject:to:content-type; bh=wDKQDavmRF09iQjbD1Y+aNCtKhuQ/UTBDb/5cOEqCj4=; b=AQPYVDfKAjyztXwyYXBR05W4caNn6uJxizMArckzu4KxDkNEGgKYncqxw5d9/Wpt+Mu970Kz/YtX 9UEkiAqc0Y0ly4PCaB5Q8NttR+gJOiEwT2G45SSod4M24OrFjASiF8RoGWgNqrXmUV4QePucrk6y eHtzDQCozjKaZHcyQW2kLK6QHXLOXuXwlLk+aZL+MzS1zOGEcaKtGqdnD4jqokCJ/hcvkQIQqVLr UAp8tSj/yvyjzkvq5CMRiTzliJEtRfpmdDUr4keLzoTEQjM6xTuTY/G6r/fPi8hgoIwe8ukGAHmU SD0Y6jpvcZB/OL8WPm0dNjmWNqicC4zwFAzktA== X-Scanner: ns3122888.ip-94-23-21.eu Authentication-Results: aspmx1.migadu.com; dkim=pass header.d=gene.com header.s=fmailg01 header.b=AQPYVDfK; dmarc=pass (policy=quarantine) header.from=gene.com; spf=pass (aspmx1.migadu.com: domain of knoblauch.nicholas@gene.com designates 192.12.78.22 as permitted sender) smtp.mailfrom=knoblauch.nicholas@gene.com X-Spam-Score: -1.50 X-TUID: oHWSF8L4pNo3 --00000000000032c0f805b3107ed3 Content-Type: text/plain; charset="UTF-8" Hi, It would be great if snakemake-mode could support `envmodules` and `containers` as top level commands as per https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html?highlight=envmodules#using-environment-modules and https://snakemake.readthedocs.io/en/latest/snakefiles/deployment.html?highlight=envmodules#running-jobs-in-containers Also, maybe I should file a separate issue about this (maybe it isn't even a snakemake-mode question), but is there a way to force the "rule" line to never indent (even if I hit 'Tab' on that line)? I consistently run into whitespace issues with org-mode+snakemake-mode. Thanks! --00000000000032c0f805b3107ed3 Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable
Hi,

Also, maybe I should file a separate=C2=A0issue about this (maybe i= t isn't even a snakemake-mode question), but is there a way to force th= e "rule" line to never indent (even if I hit 'Tab' on tha= t line)?
I consistently run into whitespace issues with org-mode+= snakemake-mode.=C2=A0

Thanks!
--00000000000032c0f805b3107ed3--