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From: Kyle Meyer <kyle@kyleam.com>
To: Nicholas Knoblauch <knoblauch.nicholas@gene.com>
Cc: snakemake-mode@inbox.kyleam.com
Subject: Re: [PATCH] mode: Add "container" and "envmodules" keywords
Date: Sun, 01 Nov 2020 16:13:15 -0500	[thread overview]
Message-ID: <87blggaihg.fsf@kyleam.com> (raw)
In-Reply-To: <D5A28139-EEF5-40D1-AF07-F2FAD0002645@gene.com>

Nicholas Knoblauch writes:

>> On Nov 1, 2020, at 2:36 PM, Kyle Meyer <kyle@kyleam.com> wrote:
>> Sure, thanks for noticing that they're missing.  Based on the docs, my
>> understanding is that "envmodules" can only be used within a rule:
>> 
>>    rule bwa:
>>        envmodules:
>>            "bio/bwa/0.7.9"
>>        [...]
>> 
>> On the other hand, it looks like "container" can be used either within a
>> rule or at the top-level.  Is that correct?
>> 
>
> I believe you’re right.

Okay, pushed (7cf04e2).

      reply	other threads:[~2020-11-01 21:13 UTC|newest]

Thread overview: 4+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2020-11-01 19:18 Add 'envmodules' and 'containers' to list of top level commands Nicholas Knoblauch
2020-11-01 20:36 ` [PATCH] mode: Add "container" and "envmodules" keywords Kyle Meyer
2020-11-01 21:04   ` Nicholas Knoblauch
2020-11-01 21:13     ` Kyle Meyer [this message]

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