From mboxrd@z Thu Jan 1 00:00:00 1970 Date: Fri, 15 Apr 2016 11:33:49 -0700 From: Endre Bakken Stovner Reply-To: kyleam/snakemake-mode Message-ID: Subject: Graph and show workflow in emacs. (#9) Mime-Version: 1.0 Content-Type: multipart/alternative; boundary="--==_mimepart_5711340dafe97_61273f85346d529c3972f"; charset=UTF-8 Content-Transfer-Encoding: 7bit List-ID: kyleam/snakemake-mode List-Archive: https://github.com/kyleam/snakemake-mode List-Post: List-Unsubscribe: , To: kyleam/snakemake-mode ----==_mimepart_5711340dafe97_61273f85346d529c3972f Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit I messed up my git repo, so here I try again. Thanks for the patience. Since emacs and snakemake is all I use, you will probably have to brace yourself for more PRs. > Hmm, but this is limited to creating the graph for the first rule ofthe Snakefile, right? Yes, I do not think it is possible to create a graph for anything but the all rule. But if it is, I have never done it and do not know how to do it. I do not yet understand the compile-code either. > I'd prefer to have this as a customizable variable, as is done with snakemake-program. I have made `snakemake-graph-program` a defcustom. But I do not know of other pieces of software that can do the same thing though. You can view, comment on, or merge this pull request online at: https://github.com/kyleam/snakemake-mode/pull/9 -- Commit Summary -- * Graph and show workflow in emacs. -- File Changes -- M snakemake.el (45) -- Patch Links -- https://github.com/kyleam/snakemake-mode/pull/9.patch https://github.com/kyleam/snakemake-mode/pull/9.diff --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/kyleam/snakemake-mode/pull/9 ----==_mimepart_5711340dafe97_61273f85346d529c3972f Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: 7bit

I messed up my git repo, so here I try again. Thanks for the patience. Since emacs and snakemake is all I use, you will probably have to brace yourself for more PRs.

Hmm, but this is limited to creating the graph for the first rule ofthe Snakefile, right?

Yes, I do not think it is possible to create a graph for anything but the all rule. But if it is, I have never done it and do not know how to do it. I do not yet understand the compile-code either.

I'd prefer to have this as a customizable variable, as is done with snakemake-program.

I have made snakemake-graph-program a defcustom. But I do not know of other pieces of software that can do the same thing though.

You can view, comment on, or merge this pull request online at:

  https://github.com/kyleam/snakemake-mode/pull/9

Commit Summary

  • Graph and show workflow in emacs.

File Changes

Patch Links:

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----==_mimepart_5711340dafe97_61273f85346d529c3972f-- From mboxrd@z Thu Jan 1 00:00:00 1970 Date: Sun, 17 Apr 2016 08:31:53 -0700 From: Endre Bakken Stovner Reply-To: kyleam/snakemake-mode Message-ID: In-Reply-To: References: Subject: Re: Graph and show workflow in emacs. (#9) Mime-Version: 1.0 Content-Type: multipart/alternative; boundary="--==_mimepart_5713ac69748a2_5d393f9631bb92a02474264"; charset=UTF-8 Content-Transfer-Encoding: 7bit List-ID: kyleam/snakemake-mode List-Archive: https://github.com/kyleam/snakemake-mode List-Post: List-Unsubscribe: , To: kyleam/snakemake-mode Cc: Kyle Meyer ----==_mimepart_5713ac69748a2_5d393f9631bb92a02474264 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit Closed #9. --- You are receiving this because you commented. Reply to this email directly or view it on GitHub: https://github.com/kyleam/snakemake-mode/pull/9#event-630385184 ----==_mimepart_5713ac69748a2_5d393f9631bb92a02474264 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: 7bit

Closed #9.

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----==_mimepart_5713ac69748a2_5d393f9631bb92a02474264-- From mboxrd@z Thu Jan 1 00:00:00 1970 Date: Sun, 17 Apr 2016 08:31:53 -0700 From: Endre Bakken Stovner Reply-To: kyleam/snakemake-mode Message-ID: In-Reply-To: References: Subject: Re: Graph and show workflow in emacs. (#9) Mime-Version: 1.0 Content-Type: multipart/alternative; boundary="--==_mimepart_5713ac695fd7c_13443fddde4c12a017574d"; charset=UTF-8 Content-Transfer-Encoding: 7bit List-ID: kyleam/snakemake-mode List-Archive: https://github.com/kyleam/snakemake-mode List-Post: List-Unsubscribe: , To: kyleam/snakemake-mode Cc: Kyle Meyer ----==_mimepart_5713ac695fd7c_13443fddde4c12a017574d Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit Looks good, reading _all_ your code now to get better aquainted with it. Going to start writing yasnippets for snakemake, do you have any you'd like to share? --- You are receiving this because you commented. Reply to this email directly or view it on GitHub: https://github.com/kyleam/snakemake-mode/pull/9#issuecomment-211044470 ----==_mimepart_5713ac695fd7c_13443fddde4c12a017574d Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: 7bit

Looks good, reading all your code now to get better aquainted with it.

Going to start writing yasnippets for snakemake, do you have any you'd like to share?

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