When I copy/paste a rule it looks like this afterwards:

  rule create_design_matrix:
  output:
  outfile = "tmpdir/run_csaw_{input_use}/design_matrix.csv"
  run:
  time = pd.Series(list(range(0, 25, 3)) * 2)
  values = time * 2 * np.pi / 17
  sine = np.sin(values)
  cosine = np.cos(values)

        design = pd.concat([time, sine, cosine], axis=1)
        design.columns = "Time Sine Cosine".split()
        design.to_csv(output.outfile, index=False, sep=" ")

Normally, I'd just mark the region and press = (evil-indent) to get the proper indentation, but that isn't working either. I'll prolly look into it myself eventually, but would love input on what you think is happening/best ways to fix.

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