From mboxrd@z Thu Jan 1 00:00:00 1970 Date: Wed, 14 Mar 2018 07:38:26 -0700 From: Veera Reply-To: kyleam/snakemake-mode Message-ID: Subject: Conflict with orgstruct-mode (#27) Mime-Version: 1.0 Content-Type: multipart/alternative; boundary="--==_mimepart_5aa933e29620_29e02ab890332ed01252ca"; charset=UTF-8 Content-Transfer-Encoding: 7bit List-ID: kyleam/snakemake-mode List-Archive: https://github.com/kyleam/snakemake-mode List-Post: List-Unsubscribe: , To: kyleam/snakemake-mode Cc: Subscribed ----==_mimepart_5aa933e29620_29e02ab890332ed01252ca Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit Hi, I use orgstruct mode to fold and expand sections of the script. When I try the same with snake file, it works as long as the snakemake-mode is not activated, but then it stops working after activate the snakemake mode. Is it because of some conflicts? I structured the code like this ``` #!/bin/env snakamake ### * imports ### * outfiles ### * rules ### * org mode sepcific ### Local Variables: ### eva: (orgstruct-mode 1) ### orgstruct-heading-prefix-regexp: "### " ### End: ``` Could you please help figure out why orgstruct-mode stops working, when I activate snakemake-mode ? -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/kyleam/snakemake-mode/issues/27 ----==_mimepart_5aa933e29620_29e02ab890332ed01252ca Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: 7bit

Hi,
I use orgstruct mode to fold and expand sections of the script. When I try the same with snake file, it works as long as the snakemake-mode is not activated, but then it stops working after activate the snakemake mode. Is it because of some conflicts?

I structured the code like this

#!/bin/env snakamake

### * imports
### * outfiles
### * rules

### * org mode sepcific
### Local Variables:
### eva: (orgstruct-mode 1)
### orgstruct-heading-prefix-regexp: "### "
### End:

Could you please help figure out why orgstruct-mode stops working, when I activate snakemake-mode ?

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----==_mimepart_5aa933e29620_29e02ab890332ed01252ca-- From mboxrd@z Thu Jan 1 00:00:00 1970 Date: Thu, 15 Mar 2018 11:57:31 +0000 (UTC) From: Kyle Meyer Reply-To: kyleam/snakemake-mode Message-ID: In-Reply-To: References: Subject: Re: Conflict with orgstruct-mode (#27) Mime-Version: 1.0 Content-Type: multipart/alternative; boundary="--==_mimepart_5aaa5fab71df8_3c592af577552ed07360c4"; charset=UTF-8 Content-Transfer-Encoding: 7bit List-ID: kyleam/snakemake-mode List-Archive: https://github.com/kyleam/snakemake-mode List-Post: List-Unsubscribe: , To: kyleam/snakemake-mode Cc: Kyle Meyer , Your activity ----==_mimepart_5aaa5fab71df8_3c592af577552ed07360c4 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit Thanks for the information. I've never used orgstruct-mode and don't know how it intercepts the commands. I probably won't get around to looking into this until this weekend. In the meantime * What version of Emacs and Org are you using? (Note that orgstruct-mode was removed in Org 9.1.6, so regardless of whether this issue is resolved here, you'll probably want to look into alternatives.) * Does orgstruct-mode work for you with in python-mode (the one defined python.el and shipped with Emacs)? -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/kyleam/snakemake-mode/issues/27#issuecomment-373352040 ----==_mimepart_5aaa5fab71df8_3c592af577552ed07360c4 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable

Thanks for the information. I've never used orgstruct-mode and don't kn= ow how it intercepts the commands. I probably won't get around to looking i= nto this until this weekend. In the meantime

  • What version of Emacs and Org are you using?

    (Note that orgstruct-mode was removed in Org 9.1.6, so regardless of whe= ther this issue is resolved here, you'll probably want to look into alterna= tives.)

  • Does orgstruct-mode work for you with in python-mode (the one defined py= thon.el and shipped with Emacs)?

&mda= sh;
You are receiving this because you are subscribed to this thread.<= br />Reply to this email directly, view it on GitHub, or mute the thread.3D""

= ----==_mimepart_5aaa5fab71df8_3c592af577552ed07360c4-- From mboxrd@z Thu Jan 1 00:00:00 1970 Date: Sun, 18 Mar 2018 18:30:05 +0000 (UTC) From: Kyle Meyer Reply-To: kyleam/snakemake-mode Message-ID: In-Reply-To: References: Subject: Re: Conflict with orgstruct-mode (#27) Mime-Version: 1.0 Content-Type: multipart/alternative; boundary="--==_mimepart_5aaeb02c65c57_9142af84565aec4599994"; charset=UTF-8 Content-Transfer-Encoding: 7bit List-ID: kyleam/snakemake-mode List-Archive: https://github.com/kyleam/snakemake-mode List-Post: List-Unsubscribe: , To: kyleam/snakemake-mode Cc: Kyle Meyer , Your activity ----==_mimepart_5aaeb02c65c57_9142af84565aec4599994 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit I've not been able to trigger the issue. I've tried using the tip of Org's maint branch, release_9.1.7-19-gea4cb1488 (as I mentioned above, orgstruct-mode is removed in master, which will be Org 9.2). Right, so I have a Snakefile that looks like this (note the s/eva/eval/ to fix the typo in your original snippet): ``` ### * imports from glob import glob ### * rules rule blah: output: "foo" shell: "echo blah > {output}" ### * org mode sepcific ### Local Variables: ### eval: (orgstruct-mode 1) ### orgstruct-heading-prefix-regexp: "### " ### End: ``` With Snakemake mode and Org on the load path and no additional configuration (i.e., `emacs -Q`), if I visit that file and hit tab on the imports line, it folds as expected. -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/kyleam/snakemake-mode/issues/27#issuecomment-374028940 ----==_mimepart_5aaeb02c65c57_9142af84565aec4599994 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable

I've not been able to trigger the issue. I've tried using the tip of Or= g's maint branch, release_9.1.7-19-gea4cb1488 (as I mentioned above, orgstr= uct-mode is removed in master, which will be Org 9.2).

Right, so I have a Snakefile that looks like this (note the s/eva/eval/ = to fix the typo in your original snippet):

### * imports

from glob import glob

### * rules

rule blah:
    output: "foo"
    shell: "echo blah > {output}"

### * org mode sepcific
### Local Variables:
### eval: (orgstruct-mode 1)
### orgstruct-heading-prefix-regexp: "### "
### End:

With Snakemake mode and Org on the load path and no additional configura= tion (i.e., emacs -Q), if I visit that file and hit tab on the= imports line, it folds as expected.

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= ----==_mimepart_5aaeb02c65c57_9142af84565aec4599994-- From mboxrd@z Thu Jan 1 00:00:00 1970 Date: Fri, 23 Mar 2018 19:52:31 +0000 (UTC) From: Veera Reply-To: kyleam/snakemake-mode Message-ID: In-Reply-To: References: Subject: Re: Conflict with orgstruct-mode (#27) Mime-Version: 1.0 Content-Type: multipart/alternative; boundary="--==_mimepart_5ab55aff34949_4542b025863ced45671f"; charset=UTF-8 Content-Transfer-Encoding: 7bit List-ID: kyleam/snakemake-mode List-Archive: https://github.com/kyleam/snakemake-mode List-Post: List-Unsubscribe: , To: kyleam/snakemake-mode Cc: Kyle Meyer , Comment ----==_mimepart_5ab55aff34949_4542b025863ced45671f Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit Hi Very sorry for the late response. Thanks a lot for taking time to look at this. After seeing your comments, I did explore it a little. The problem was I manually activated snakemake-mode and while doing so I lost the orgstruct mode (I assume), which is the reason why it didn't work for me. Now when I added the add-to-list in my configuration file for snakemake-mode. Now when I open the snakemake file i get both modes active and the folding works!! Thanks for your help. -- You are receiving this because you commented. Reply to this email directly or view it on GitHub: https://github.com/kyleam/snakemake-mode/issues/27#issuecomment-375780181 ----==_mimepart_5ab55aff34949_4542b025863ced45671f Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable

Hi
Very sorry for the late response. Thanks a lot for taking time to look at t= his. After seeing your comments, I did explore it a little. The problem was= I manually activated snakemake-mode and while doing so I lost the orgstruc= t mode (I assume), which is the reason why it didn't work for me. Now when = I added the add-to-list in my configuration file for snakemake-mode. Now wh= en I open the snakemake file i get both modes active and the folding works!= ! Thanks for your help.

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= ----==_mimepart_5ab55aff34949_4542b025863ced45671f-- From mboxrd@z Thu Jan 1 00:00:00 1970 Date: Fri, 23 Mar 2018 12:52:39 -0700 From: Veera Reply-To: kyleam/snakemake-mode Message-ID: In-Reply-To: References: Subject: Re: Conflict with orgstruct-mode (#27) Mime-Version: 1.0 Content-Type: multipart/alternative; boundary="--==_mimepart_5ab55b0728497_775a3fe8d1b16f3071687"; charset=UTF-8 Content-Transfer-Encoding: 7bit List-ID: kyleam/snakemake-mode List-Archive: https://github.com/kyleam/snakemake-mode List-Post: List-Unsubscribe: , To: kyleam/snakemake-mode Cc: Kyle Meyer , Comment ----==_mimepart_5ab55b0728497_775a3fe8d1b16f3071687 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit Closed #27. -- You are receiving this because you commented. Reply to this email directly or view it on GitHub: https://github.com/kyleam/snakemake-mode/issues/27#event-1538640418 ----==_mimepart_5ab55b0728497_775a3fe8d1b16f3071687 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: 7bit

Closed #27.

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----==_mimepart_5ab55b0728497_775a3fe8d1b16f3071687-- From mboxrd@z Thu Jan 1 00:00:00 1970 Date: Fri, 23 Mar 2018 20:29:39 +0000 (UTC) From: Kyle Meyer Reply-To: kyleam/snakemake-mode Message-ID: In-Reply-To: References: Subject: Re: Conflict with orgstruct-mode (#27) Mime-Version: 1.0 Content-Type: multipart/alternative; boundary="--==_mimepart_5ab563b36657d_2c6993fb80f1e6f3410066d"; charset=UTF-8 Content-Transfer-Encoding: 7bit List-ID: kyleam/snakemake-mode List-Archive: https://github.com/kyleam/snakemake-mode List-Post: List-Unsubscribe: , To: kyleam/snakemake-mode Cc: Kyle Meyer , Your activity ----==_mimepart_5ab563b36657d_2c6993fb80f1e6f3410066d Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit Great, glad you got it working. Thanks for following up. -- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/kyleam/snakemake-mode/issues/27#issuecomment-375789334 ----==_mimepart_5ab563b36657d_2c6993fb80f1e6f3410066d Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: 7bit

Great, glad you got it working. Thanks for following up.

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