From mboxrd@z Thu Jan  1 00:00:00 1970
Date: Mon, 18 Apr 2016 10:53:04 -0700
From: Endre Bakken Stovner <notifications@github.com>
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Subject: Re: What is the snakemake popup actions supposed to do/how are they
 supposed to work? (#11)
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I have folders upon folders of snakefiles for each of my projects. 

I am usually in the base folder of my current project calling snakefiles in subfolders.

Example of my last invocation:

`endrebak@havpryd ~/c/programmable_epigenetics> snakemake --snakefile snakefiles/csaw/graph_filter_parameters.snakefile -j 4`.

Will read the docs of the functions you mentioned.

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<p>I have folders upon folders of snakefiles for each of my projects. </p>

<p>I am usually in the base folder of my current project calling snakefiles in subfolders.</p>

<p>Example of my last invocation:</p>

<p><code>endrebak@havpryd ~/c/programmable_epigenetics&gt; snakemake --snakefile snakefiles/csaw/graph_filter_parameters.snakefile -j 4</code>.</p>

<p>Will read the docs of the functions you mentioned.</p>

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