From mboxrd@z Thu Jan 1 00:00:00 1970 Date: Mon, 18 Apr 2016 03:29:02 -0700 From: Endre Bakken Stovner Reply-To: kyleam/snakemake-mode Message-ID: Subject: How do you display graphs and save them? (#12) Mime-Version: 1.0 Content-Type: multipart/alternative; boundary="--==_mimepart_5714b6ee9bc6c_235f3f9abee232c0322045b"; charset=UTF-8 Content-Transfer-Encoding: 7bit List-ID: kyleam/snakemake-mode List-Archive: https://github.com/kyleam/snakemake-mode List-Post: List-Unsubscribe: , To: kyleam/snakemake-mode ----==_mimepart_5714b6ee9bc6c_235f3f9abee232c0322045b Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit I got the latest version from elpa, and tried `M-x snakemake-graph-mode ` and nothing happens, except that the minibuffer says `Snakemake-graph-mode enabled`. When I then use `M-x snakemake-graph-save ` I get the message `Not in snakemake graph buffer`. Am I doing something wrong? I'd just like to create a graph of my current pipeline and view it in emacs. My version is `20160417.2206`. --- You are receiving this because you are subscribed to this thread. Reply to this email directly or view it on GitHub: https://github.com/kyleam/snakemake-mode/issues/12 ----==_mimepart_5714b6ee9bc6c_235f3f9abee232c0322045b Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: 7bit

I got the latest version from elpa, and tried M-x snakemake-graph-mode <RET> and nothing happens, except that the minibuffer says Snakemake-graph-mode enabled. When I then use M-x snakemake-graph-save <RET> I get the message Not in snakemake graph buffer.

Am I doing something wrong? I'd just like to create a graph of my current pipeline and view it in emacs.

My version is 20160417.2206.

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----==_mimepart_5714b6ee9bc6c_235f3f9abee232c0322045b-- From mboxrd@z Thu Jan 1 00:00:00 1970 Date: Wed, 20 Apr 2016 09:28:56 -0700 From: Endre Bakken Stovner Reply-To: kyleam/snakemake-mode Message-ID: In-Reply-To: References: Subject: Re: How do you display graphs and save them? (#12) Mime-Version: 1.0 Content-Type: multipart/alternative; boundary="--==_mimepart_5717ae48cf238_5ce43fe22bcb92b81842d5"; charset=UTF-8 Content-Transfer-Encoding: 7bit List-ID: kyleam/snakemake-mode List-Archive: https://github.com/kyleam/snakemake-mode List-Post: List-Unsubscribe: , To: kyleam/snakemake-mode Cc: Kyle Meyer , Comment ----==_mimepart_5717ae48cf238_5ce43fe22bcb92b81842d5 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit Closed #12. --- You are receiving this because you commented. Reply to this email directly or view it on GitHub: https://github.com/kyleam/snakemake-mode/issues/12#event-634816295 ----==_mimepart_5717ae48cf238_5ce43fe22bcb92b81842d5 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: 7bit

Closed #12.

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----==_mimepart_5717ae48cf238_5ce43fe22bcb92b81842d5-- From mboxrd@z Thu Jan 1 00:00:00 1970 Date: Wed, 20 Apr 2016 09:28:56 -0700 From: Endre Bakken Stovner Reply-To: kyleam/snakemake-mode Message-ID: In-Reply-To: References: Subject: Re: How do you display graphs and save them? (#12) Mime-Version: 1.0 Content-Type: multipart/alternative; boundary="--==_mimepart_5717ae48b1920_70593fd828f752c01097176"; charset=UTF-8 Content-Transfer-Encoding: 7bit List-ID: kyleam/snakemake-mode List-Archive: https://github.com/kyleam/snakemake-mode List-Post: List-Unsubscribe: , To: kyleam/snakemake-mode Cc: Kyle Meyer , Comment ----==_mimepart_5717ae48b1920_70593fd828f752c01097176 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 7bit Thanks. Haven't had the time to try it out but will do soon. I think having a single snakefile would be easier in many cases, but in my case it would be way too long. I have never used targets so will look up exactly what they are and how to use them. Will probably make understanding your code easier. --- You are receiving this because you commented. Reply to this email directly or view it on GitHub: https://github.com/kyleam/snakemake-mode/issues/12#issuecomment-212501913 ----==_mimepart_5717ae48b1920_70593fd828f752c01097176 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: 7bit

Thanks. Haven't had the time to try it out but will do soon. I think having a single snakefile would be easier in many cases, but in my case it would be way too long. I have never used targets so will look up exactly what they are and how to use them. Will probably make understanding your code easier.

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----==_mimepart_5717ae48b1920_70593fd828f752c01097176-- From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp1 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms12 with LMTPS id 45OHABbzmF6vPwAAsNZ9tg (envelope-from ) for ; Fri, 17 Apr 2020 00:06:46 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp1 with LMTPS id QBDOJxXzmF5JTAAAbx9fmQ (envelope-from ) for ; Fri, 17 Apr 2020 00:06:45 +0000 Received: from pb-smtp1.pobox.com (pb-smtp1.pobox.com [64.147.108.70]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id CFF459421E2 for ; Fri, 17 Apr 2020 00:06:44 +0000 (UTC) Received: from pb-smtp1.pobox.com (unknown [127.0.0.1]) by pb-smtp1.pobox.com (Postfix) with ESMTP id 305AB5687A for ; Thu, 16 Apr 2020 20:06:44 -0400 (EDT) (envelope-from kyle@kyleam.com) DKIM-Signature: v=1; a=rsa-sha1; c=relaxed; d=pobox.com; h=from:to :subject:in-reply-to:references:date:message-id:mime-version :content-type; s=sasl; bh=r8KfrYXwXQYf+gcssoAKtqo/sGA=; b=G51sMk ZG6uSxmTBqU5U4/k00rvma/CXd9wrrUxUM6sj0IJaiYASnho7HSWrT27ci0Nv/sO GSsm8uyZ9PyvMNdd/MkHrMT6XZdO4gDeMigTkkdeQBl03QS8fm9BZoiiMiOJ7onk 5eLlXRE+f5MFsFW+MZlBSmLcZEZsjIJxdL/lU= Received: from pb-smtp1.nyi.icgroup.com (unknown [127.0.0.1]) by pb-smtp1.pobox.com (Postfix) with ESMTP id 28BEF56876 for ; Thu, 16 Apr 2020 20:06:44 -0400 (EDT) (envelope-from kyle@kyleam.com) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed; d=kyleam.com; h=from:to:subject:in-reply-to:references:date:message-id:mime-version:content-type; s=mesmtp; bh=XtlU244VP/sc0GfPDzfu8RIcUvMfZyVxpEvNOY0OyjE=; b=1DIfhV88cm4dCR6AJaXqbmpHzawYGOzoEsMpT6aON/HagB6VVupmGNxtp39pSceEeDwgrshr3wGfwi2bHQX+uGCtXMv2dYS+az2O3w9gfk0rzyZj5aZLDh6JgLzV0mnVGVa8WCJ18iFcGENObw24m4m590M4VZJMr0HQVNieRS0= Received: from localhost (unknown [45.33.91.115]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pb-smtp1.pobox.com (Postfix) with ESMTPSA id 9563D56874 for ; Thu, 16 Apr 2020 20:06:43 -0400 (EDT) (envelope-from kyle@kyleam.com) From: Kyle Meyer To: snakemake-mode@inbox.kyleam.com Subject: Re: How do you display graphs and save them? (#12) In-Reply-To: References: Date: Fri, 17 Apr 2020 00:06:42 +0000 Message-ID: <878siv7z71.fsf@kyleam.com> MIME-Version: 1.0 Content-Type: text/plain X-Pobox-Relay-ID: 520FEE4A-803F-11EA-990A-C28CBED8090B-24757444!pb-smtp1.pobox.com X-Scanner: scn0 X-Spam-Score: -1.10 Authentication-Results: aspmx1.migadu.com; dkim=pass header.d=pobox.com header.s=sasl header.b=G51sMk Z; dkim=pass header.d=kyleam.com header.s=mesmtp header.b=1DIfhV88; dmarc=none; spf=pass (aspmx1.migadu.com: domain of kyle@kyleam.com designates 64.147.108.70 as permitted sender) smtp.mailfrom=kyle@kyleam.com X-Scan-Result: default: False [-1.10 / 13.00]; RCVD_VIA_SMTP_AUTH(0.00)[]; ARC_NA(0.00)[]; R_DKIM_ALLOW(-0.20)[pobox.com:s=sasl,kyleam.com:s=mesmtp]; URIBL_BLOCKED(0.00)[kyleam.com:dkim,pobox.com:dkim]; FROM_HAS_DN(0.00)[]; R_SPF_ALLOW(-0.20)[+ip4:64.147.108.0/24:c]; TO_MATCH_ENVRCPT_ALL(0.00)[]; MIME_GOOD(-0.10)[text/plain]; PREVIOUSLY_DELIVERED(0.00)[snakemake-mode@inbox.kyleam.com]; TO_DN_NONE(0.00)[]; RCPT_COUNT_ONE(0.00)[1]; RCVD_COUNT_THREE(0.00)[4]; DMARC_NA(0.00)[kyleam.com]; IP_REPUTATION_HAM(0.00)[asn: 11403(-0.19), country: US(-0.01), ip: 64.147.108.70(0.00)]; MX_GOOD(-0.50)[cached: mx-5.rightbox.com]; DKIM_TRACE(0.00)[pobox.com:+,kyleam.com:+]; FROM_EQ_ENVFROM(0.00)[]; MIME_TRACE(0.00)[0:+]; RCVD_TLS_LAST(0.00)[]; ASN(0.00)[asn:11403, ipnet:64.147.108.0/24, country:US]; MID_RHS_MATCH_FROM(0.00)[]; SUBJECT_HAS_QUESTION(0.00)[]; RCVD_IN_DNSWL_LOW(-0.10)[64.147.108.70:from] X-TUID: Si5qO84+LPIE Some replies are missing, as described at https://inbox.kyleam.com/snakemake-mode/874ktmyh4u.fsf@kyleam.com/ Please visit the link in the parent message to see the full discussion.