From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp12.migadu.com ([2001:41d0:1004:224b::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms4r.migadu.com with LMTPS id 4Jg0JflIumOtUwAATbCpxg (envelope-from ) for ; Sun, 08 Jan 2023 05:39:21 +0100 Received: from mta0.migadu.com ([2001:41d0:1004:224b::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp12.migadu.com with LMTPS id aL4xJflIumOrbQAAauVa8A (envelope-from ) for ; Sun, 08 Jan 2023 05:39:21 +0100 X-Report-Abuse: Please report any abuse attempt to abuse@migadu.com and include these headers. DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=kyleam.com; s=key1; t=1673152761; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc:mime-version:mime-version:content-type:content-type: in-reply-to:in-reply-to:references:references; bh=JhVRXu+HRfPxNyUqh5y/Rjk3fv63DZEARH/q8gAO/fU=; b=RFm3oYxle0RQ4aQXb1TGCCdnUjBLn632t5enQGpEJE3RqiHUyfQ1lmHZG3bqQEthDRIqd2 CMdJ8DAzO6iqxH2pGdB/G71ocKHLCGi9LKiDEG5zKjoOXbvok2jXp/BM2qlZL3maZt896S 5dC5xPgQ0nb5Cv+7j4lLxc5iZhMKg6Fvn7JAEJCIeTF4I3j6gTi+IpTdtynlJ8GmWd5G/S dhCwq7/atDXdZsv0eiup/Edm17kqBWKSNd/3MgDzIHx4AHPeFZeWJKp7spRjbYfXFA3bRV ncno9xaG44ahFte6/dZjDWY1lsgCMq/rComSqoZQOuiLN8h/+pEYjIRca34aCA== From: Kyle Meyer To: Diane Trout Cc: snakemake-mode@inbox.kyleam.com Subject: Re: snakemake mode test failures with emacs 28.2 on Debian In-Reply-To: <336d19155aed2cffbbc289720b995f73bd5a33ce.camel@ghic.org> References: <875ydhkhtc.fsf@kyleam.com> <336d19155aed2cffbbc289720b995f73bd5a33ce.camel@ghic.org> Date: Sat, 07 Jan 2023 23:39:20 -0500 Message-ID: <87zgatiqrr.fsf@kyleam.com> MIME-Version: 1.0 Content-Type: text/plain X-Migadu-Flow: FLOW_OUT X-TUID: /6W2spBWp2mA Diane Trout writes: > I discovered the snakemake ert tests run on my Debian testing system > but fail in the unstable package build environment. > > I read through the snakemake.el code and figured out how it was calling > the snakemake executable. I found the problem, and it's not related to > snakemake-mode, it looks like snakemake executable has an > incompatibility with python3.11. I see. Thanks for investigating. > Upstream's solution is here and involves using a more recently updated > depedency. > https://github.com/snakemake/snakemake/issues/1952 It looks like the associated fix came in with 50b8f160 (fix: Change ratelimiter dependency to throttler (#1958), 2022-11-10), which was part of the v7.18.2 release. So, the issue should be resolved whenever unstable gets bumped to the latest Snakemake.