From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp2 ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms12 with LMTPS id gOlFD/Akn18BDwAAsNZ9tg (envelope-from ) for ; Sun, 01 Nov 2020 21:13:20 +0000 Received: from aspmx1.migadu.com ([2001:41d0:2:4a6f::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp2 with LMTPS id qI/gCvAkn1/MTwAAB5/wlQ (envelope-from ) for ; Sun, 01 Nov 2020 21:13:20 +0000 Received: from pb-smtp2.pobox.com (pb-smtp2.pobox.com [64.147.108.71]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id 56DE69403A6 for ; Sun, 1 Nov 2020 21:13:19 +0000 (UTC) Received: from pb-smtp2.pobox.com (unknown [127.0.0.1]) by pb-smtp2.pobox.com (Postfix) with ESMTP id 03B5583AB5; Sun, 1 Nov 2020 16:13:17 -0500 (EST) (envelope-from kyle@kyleam.com) DKIM-Signature: v=1; a=rsa-sha1; c=relaxed; d=pobox.com; h=from:to:cc :subject:in-reply-to:references:date:message-id:mime-version :content-type:content-transfer-encoding; s=sasl; bh=cYfh+0yEjBM/ D5v2ENcsgEVPG0s=; b=W/9McWEDZimy96yBqC9DXK+yM0XVl7qYA4MeUU7C+3II V8cfB6e1UjmKIlTvcAeWSMLvqPSCn4+GpTeXRm1KxncmxqDBCKfYbFmu4Zh/Gwzx M1x5s5NlpajliecHe7Pcz8mepYqpg1z/xPhkT7AZiGLw4P7FaUNwKl941R9gH3A= Received: from pb-smtp2.nyi.icgroup.com (unknown [127.0.0.1]) by pb-smtp2.pobox.com (Postfix) with ESMTP id F026B83AB4; Sun, 1 Nov 2020 16:13:16 -0500 (EST) (envelope-from kyle@kyleam.com) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed; d=kyleam.com; h=from:to:cc:subject:in-reply-to:references:date:message-id:mime-version:content-type:content-transfer-encoding; s=mesmtp; bh=kTmp7dfVuyQDOiG/18W4Yea86ZmuuABFvkchjHYdYmM=; b=WgZuMZJFNwZl3/OpwCqBxtOzsBkjUuQs/Qq/5mb5UCV7TEIJeyFiSqkz5+IHhVtOFbO7RWHubKRXv3Dj45a1IUhJZyKlTAlfRKtI5mpHFOciwnfev6WjByKcQ7paWGlg3/M+K6BTKHrHgI8IHEJZRQlmMmUonnWDGlqTYo0fXiQ= Received: from localhost (unknown [45.33.91.115]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by pb-smtp2.pobox.com (Postfix) with ESMTPSA id 69DED83AB3; Sun, 1 Nov 2020 16:13:16 -0500 (EST) (envelope-from kyle@kyleam.com) From: Kyle Meyer To: Nicholas Knoblauch Cc: snakemake-mode@inbox.kyleam.com Subject: Re: [PATCH] mode: Add "container" and "envmodules" keywords In-Reply-To: References: <87eelcak64.fsf@kyleam.com> Date: Sun, 01 Nov 2020 16:13:15 -0500 Message-ID: <87blggaihg.fsf@kyleam.com> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Pobox-Relay-ID: 0F1A5870-1C87-11EB-BB5E-74DE23BA3BAF-24757444!pb-smtp2.pobox.com X-Scanner: ns3122888.ip-94-23-21.eu Authentication-Results: aspmx1.migadu.com; dkim=pass header.d=pobox.com header.s=sasl header.b=W/9McWED; dkim=pass header.d=kyleam.com header.s=mesmtp header.b=WgZuMZJF; dmarc=none; spf=pass (aspmx1.migadu.com: domain of kyle@kyleam.com designates 64.147.108.71 as permitted sender) smtp.mailfrom=kyle@kyleam.com X-Spam-Score: -1.00 X-TUID: 8EJvV/tngrKF Nicholas Knoblauch writes: >> On Nov 1, 2020, at 2:36 PM, Kyle Meyer wrote: >> Sure, thanks for noticing that they're missing. Based on the docs, my >> understanding is that "envmodules" can only be used within a rule: >>=20 >> rule bwa: >> envmodules: >> "bio/bwa/0.7.9" >> [...] >>=20 >> On the other hand, it looks like "container" can be used either within a >> rule or at the top-level. Is that correct? >>=20 > > I believe you=E2=80=99re right. Okay, pushed (7cf04e2).